Publikationen

Deep Learning for 3D Vascular Segmentation in Phase Contrast Tomography.

Yagis E, Aslani S, Jain Y, Zhou Y, Rahmani S, Brunet J, Bellier A, Werlein C, Ackermann M, Jonigk D, Tafforeau P, Lee PD, Walsh C.

Res Sq [Preprint]. 2024 Jul 16:rs.3.rs-4613439. doi: 10.21203/rs.3.rs-4613439/v1.

Imaging Three-Dimensional Airway Morphology in Congenital Pulmonary Airway Malformation Using Hierarchical Phase Contrast Tomography.

Verleden SE, Urban T, Brunet J, Wen W, Peeters DJE, Lapperre TS, Walsh C, Tafforeau P, Dejea H, Jonigk D, Ackermann M, Van Hoorenbeeck K, Lee PD, Jacob J, Hendriks JMH.

Am J Respir Crit Care Med. 2024 Jul 19. doi: 10.1164/rccm.202403-0509IM. Online ahead of print.

Multidimensional Analysis of the Adult Human Heart in Health and Disease Using Hierarchical Phase-Contrast Tomography.

Brunet J, Cook AC, Walsh CL, Cranley J, Tafforeau P, Engel K, Arthurs O, Berruyer C, Burke O'Leary E, Bellier A, Torii R, Werlein C, Jonigk DD, Ackermann M, Dollman K, Lee PD.

Radiology. 2024 Jul;312(1):e232731. doi: 10.1148/radiol.232731.

Multidimensional Analysis of the Adult Human Heart in Health and Disease using Hierarchical Phase-Contrast Tomography (HiP-CT).

Brunet J, Cook AC, Walsh CL, Cranley J, Tafforeau P, Engel K, Berruyer C, O'Leary EB, Bellier A, Torii R, Werlein C, Jonigk DD, Ackermann M, Dollman K, Lee PD.

Radiology. 2024 Jul;312(1):e232731. doi: 10.1148/radiol.232731.

Mapping the blood vasculature in an intact human kidney using hierarchical phase-contrast tomography.

Rahmani S, Jafree DJ, Lee PD, Tafforeau P, Brunet J, Nandanwar S, Jacob J, Bellier A, Ackermann M, Jonigk DD, Shipley RJ, Long DA, Walsh CL.

bioRxiv [Preprint]. 2024 Jul 5:2023.03.28.534566. doi: 10.1101/2023.03.28.534566.

aration of large biological samples for high-resolution, hierarchical, synchrotron phase-contrast tomography with multimodal imaging compatibility.

Brunet J, Walsh CL, Wagner WL, Bellier A, Werlein C, Marussi S, Jonigk DD, Verleden SE, Ackermann M, Lee PD, Tafforeau P.

Nat Protoc. 2023 May;18(5):1441-1461. doi: 10.1038/s41596-023-00804-z. Epub 2023 Mar 1.

Novel Insight into Pulmonary Fibrosis and Long COVID.

Kamp JC, Werlein C, Plucinski EKJ, Neubert L, Welte T, Lee PD, Tafforeau P, Walsh C, Kuehnel MP, Schuppan D, Hoeper MM, Jonigk DD, Ackermann M.

Am J Respir Crit Care Med. 2023 Apr 15;207(8):1105-1107. doi: 10.1164/rccm.202212-2314LE.

Comment on: Intrapulmonary shunt and alveolar dead space in a cohort of patients with acute COVID-19 pneumonitis and early recovery.

Ackermann M, Tafforeau P, Brunet J, Kamp JC, Werlein C, Kühnel MP, Jacob J, Walsh CL, Lee PD, Welte T, Jonigk DD.

Eur Respir J. 2023 Feb 9;61(2):2202121. doi: 10.1183/13993003.02121-2022. Print 2023 Feb.

The fatal trajectory of pulmonary COVID-19 is driven by lobular ischemia and fibrotic remodelling.

Ackermann M, Kamp JC, Werlein C, Walsh CL, Stark H, Prade V, Surabattula R, Wagner WL, Disney C, Bodey AJ, Illig T, Leeming DJ, Karsdal MA, Tzankov A, Boor P, Kühnel MP, Länger FP, Verleden SE, Kvasnicka HM, Kreipe HH, Haverich A, Black SM, Walch A, Tafforeau P, Lee PD, Hoeper MM, Welte T, Seeliger B, David S, Schuppan D, Mentzer SJ, Jonigk DD.

EBioMedicine. 2022 Nov;85:104296. doi: 10.1016/j.ebiom.2022.104296. Epub 2022 Oct 4.

Pulmonary and Systemic Pathology in COVID-19—Holistic Pathological Analyses.

Jonigk D, Werlein C, Lee PD, Kauczor HU, Länger F, Ackermann M.

Dtsch Arztebl Int. 2022 Jun 24;119(25):429-435. doi: 10.3238/arztebl.m2022.0231.

A multiscale X-ray phase-contrast tomography dataset of a whole human left lung.

Xian RP, Walsh CL, Verleden SE, Wagner WL, Bellier A, Marussi S, Ackermann M, Jonigk DD, Jacob J, Lee PD, Tafforeau P.

Sci Data. 2022 Jun 2;9(1):264. doi: 10.1038/s41597-022-01353-y.

PMID: 35654864 Free PMC article.

Imaging intact human organs with local resolution of cellular structures using hierarchical phase-contrast tomography.

Walsh CL, Tafforeau P, Wagner WL, Jafree DJ, Bellier A, Werlein C, Kühnel MP, Boller E, Walker-Samuel S, Robertus JL, Long DA, Jacob J, Marussi S, Brown E, Holroyd N, Jonigk DD, Ackermann M, Lee PD.

Nat Methods. 2021 Dec;18(12):1532-1541. doi: 10.1038/s41592-021-01317-x. Epub 2021 Nov 4.

The Bronchial Circulation in COVID-19 Pneumonia.

Ackermann M, Tafforeau P, Wagner WL, Walsh CL, Werlein C, Kühnel MP, Länger FP, Disney C, Bodey AJ, Bellier A, Verleden SE, Lee PD, Mentzer SJ, Jonigk DD.

Am J Respir Crit Care Med. 2022 Jan 1;205(1):121-125. doi: 10.1164/rccm.202103-0594IM.